Index

A

add_ff_params() (in module pylift.builder), [1] adjust_charges() (in module pylift.builder), [1]

antechamber() (in module pylift.amber) ANTECHAMBER_EXEC (in module pylift.amber) assign_linkers() (in module pylift.builder), [1]

C

cleanup_pylift() (in module pylift.utilities), [1]

convert_to_pseudo() (in module pylift.builder), [1]

D

distribute_charges() (in module pylift.builder), [1]

I

imported_modules (in module pylift.utilities)

M

module pylift, [1] pylift.amber pylift.builder, [1] pylift.reader, [1] pylift.utilities, [1] pylift.vmd, [1] pylift.writer, [1]

P

pylift module, [1] pylift.amber module pylift.builder module, [1] pylift.reader module, [1]

pylift.utilities module, [1] pylift.vmd module, [1] pylift.writer module, [1] pylift_help() (in module pylift), [1]

R

read_frcmod() (in module pylift.reader), [1] read_gaff2() (in module pylift.reader), [1] read_json() (in module pylift.utilities), [1] read_mol2() (in module pylift.reader), [1]

read_topo() (in module pylift.reader), [1] remove_h() (in module pylift.builder), [1] remove_h_old() (in module pylift.builder), [1] run_vmd_commands() (in module pylift.vmd), [1]

T

test_antechamber_exec() (in module pylift.amber) test_vmd_exec() (in module pylift.vmd), [1]

topo_write() (in module pylift.vmd), [1] types_to_names() (in module pylift.builder), [1]

V

VMD_EXEC (in module pylift.vmd)

W

write_json() (in module pylift.utilities), [1]

write_lammps() (in module pylift.writer), [1] write_mol2() (in module pylift.writer), [1]